Orbitrap Script 2.0

Analysis of MS phosphorylation

Script accepts psms text data files in tab separated format
Script accepts single zip file created according to following rules:
- Zip file includes directories with sample names
- Every directory has single file for qualitative analysis and number of files for quantitative analysis
- Name of files for qualitative analysis and for quantitative analysis have to be distinguishable by unique identifiers, which can be specified below
At least 2 distinct files have to be supplied
For overview of accepted format see example files from sample_files.zip from human Dishevelled 2
All parameters have to be specified
Script produces 3 files.
- Report for qualitative analysis with sample characteristics and peptide data
- Summary of phosphorylations from every sample
- Quantitative analysis of individual cluster phosphorylations
Result files are kept on server for 24 hours

Task name:
Protein sequence:
Protein Group Accession:

Input:

Quality File Identifier:
Quantity File Identifier:

Ion Score cutoff:
Phosphorylation probability cutoff (in %):
M/Z Difference:
Retention Time Difference:

Sequence:
Protein Group Accessions:
Phospho RS Site Probabilities:
Precursor Area:
IonScore:
M/Z:
Retention Time:
First Scan:
Spectrum File: